Basic Information
Locus ID:
Thhalv10015452m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
TPx1
Description:
peroxiredoxin activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 8630738 | 8631958 | + | Thhalv10015452m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 46,799.60 Da | 35.34 | 93.08 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 201 | 356 | 1.8E-42 | IPR006527 |
| Pfam | PF00646 | F-box domain | 3 | 40 | 6.0E-8 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 97 | 261 | 4.58E-5 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 124 | 4.06E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 46 | 5.7E-6 | - |
| SMART | SM00256 | fbox_2 | 7 | 47 | 1.1E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 96 | 328 | 2.3E-41 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 47 | 9.841896 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13680.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006401009.1 | F-box/kelch-repeat protein At3g13680 [Eutrema salsugineum] | 0 |
| Q9LID1 | F-box/kelch-repeat protein At3g13680 OS=Arabidopsis thaliana OX=3702 GN=At3g13680 PE=2 SV=1 | 0 | |
| TrEMBL | V4LJ45 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015452mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 24 | AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... |
| Brassicaceae | Eutrema salsugineum | 15 | Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g11150.v2.2, Sp3g32750.v2.2 |
| Brassicaceae | Brassica nigra | 13 | BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... |