Basic Information
Locus ID:
Thhalv10015450m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 4446002 | 4448133 | + | Thhalv10015450m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 68,682.39 Da | 44.87 | 86.14 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 27 | 111 | 4.8E-10 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 206 | 474 | 2.6E-90 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 15 | 127 | 5.18E-20 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 15 | 153 | 1.4E-15 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 131 | 6.6E-8 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 95 | 12.474292 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 206 | 498 | 90.780968 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 608 | - | - |
| Coils | Coil | Coil | 540 | 567 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13600.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_006399854.1 | putative BTB/POZ domain-containing protein At5g13600 [Eutrema salsugineum] | 0 |
| Q9FNB3 | Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana OX=3702 GN=At5g13600 PE=3 SV=1 | 0 | |
| TrEMBL | V4LFW3 | NPH3 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015450mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology