Basic Information
Locus ID:
Thhalv10015432m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
mRNA 3'-splice site recognition
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 2324663 | 2326147 | - | Thhalv10015432m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 53,698.79 Da | 49.62 | 80.34 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 422 | 470 | 5.8E-9 | IPR000626 |
| Pfam | PF01805 | Surp module | 219 | 270 | 1.1E-7 | IPR000061 |
| Pfam | PF01805 | Surp module | 32 | 86 | 1.0E-8 | IPR000061 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 196 | 273 | 5.23E-11 | IPR035967 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 394 | 471 | 1.75E-15 | IPR029071 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 14 | 91 | 1.2E-10 | IPR035967 |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 213 | 271 | 2.5E-11 | IPR035967 |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 25 | 87 | 1.9E-14 | IPR035967 |
| Gene3D | G3DSA:3.10.20.90 | - | 367 | 472 | 2.4E-20 | - |
| SMART | SM00648 | surpneu2 | 30 | 88 | 2.4E-4 | IPR000061 |
| SMART | SM00648 | surpneu2 | 218 | 272 | 0.078 | IPR000061 |
| ProSiteProfiles | PS50128 | SURP motif repeat profile. | 32 | 79 | 12.001679 | IPR000061 |
| ProSiteProfiles | PS50128 | SURP motif repeat profile. | 220 | 264 | 12.001679 | IPR000061 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 422 | 472 | 12.334973 | IPR000626 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12280.1 | SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein. | 0 |
| RefSeq | XP_024012371.1 | probable splicing factor 3A subunit 1 [Eutrema salsugineum] | 0 |
| Q8RXF1 | Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana OX=3702 GN=At1g14650 PE=1 SV=2 | 0 | |
| TrEMBL | V4N5C4 | Ubiquitin-like domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015432mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G49130.1, AT5G06520.1, AT5G06890.1, AT5G12280.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10015432m.g.v1.0, Thhalv10015678m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 4 | BniB03g006140.2N, BniB05g073630.2N, BniB05g073670.2N ... |