Basic Information
Locus ID:
Thhalv10015344m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 12712027 | 12714285 | + | Thhalv10015344m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 31,983.95 Da | 49.50 | 75.48 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 234 | 276 | 6.19864E-18 | - |
| Pfam | PF13639 | Ring finger domain | 234 | 276 | 3.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 222 | 279 | 2.43E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 185 | 279 | 1.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 235 | 275 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 235 | 276 | 11.191014 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024012588.1 | E3 ubiquitin ligase BIG BROTHER-related [Eutrema salsugineum] | 0 |
| Q9LT17 | E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana OX=3702 GN=BBR PE=2 SV=1 | 0 | |
| TrEMBL | V4LLG9 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015344mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology