Basic Information
Locus ID:
Thhalv10015303m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 13027839 | 13031369 | + | Thhalv10015303m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 25,183.95 Da | 44.54 | 88.53 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 75 | 8.26709E-44 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 5.4E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 89 | 171 | 6.9E-21 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 76 | 8.11E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 75 | 4.9E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 2.9E-40 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 179 | 13.695372 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.58077 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 3.6E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 3.6E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 3.6E-29 | IPR002100 |
| Coils | Coil | Coil | 144 | 174 | - | - |
| Coils | Coil | Coil | 88 | 108 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51870.4 | - | 0 |
| RefSeq | XP_006401901.1 | MADS-box protein AGL71 [Eutrema salsugineum] | 0 |
| Q9LT93 | MADS-box protein AGL71 OS=Arabidopsis thaliana OX=3702 GN=AGL71 PE=2 SV=1 | 0 | |
| TrEMBL | V4LHX6 | MADS-box protein AGL42-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015303mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology