Basic Information
Locus ID:
Thhalv10015259m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 1476750 | 1478192 | - | Thhalv10015259m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 42,093.96 Da | 38.65 | 88.59 | -0.08 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05150.1 | autophagy-related gene 18E. | 0 |
| RefSeq | XP_006398976.1 | autophagy-related protein 18e [Eutrema salsugineum] | 0 |
| Q9FHK8 | Autophagy-related protein 18e OS=Arabidopsis thaliana OX=3702 GN=ATG18E PE=2 SV=1 | 0 | |
| TrEMBL | V4L9S4 | WD_REPEATS_REGION domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015259mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015259m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37690.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g002090.2N |