Basic Information
Locus ID:
Thhalv10015032m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
40s ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 13675866 | 13677093 | - | Thhalv10015032m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.73 | 13,856.03 Da | 48.22 | 85.45 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 25 | 119 | 5.8E-28 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 23 | 120 | 1.83E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 7 | 122 | 6.5E-49 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 25 | 119 | 3.7E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 22 | 120 | 4.5E-40 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 47 | 62 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 58 | 73 | 6.9E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 80 | 94 | 6.9E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 23 | 36 | 6.9E-14 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 21 | 120 | 18.399542 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_006401963.1 | 40S ribosomal protein S20-1 [Eutrema salsugineum] | 0 |
| P49200 | Small ribosomal subunit protein uS10z/uS10x OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2 | 0 | |
| TrEMBL | A0A397XIU9 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA03T10901Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology