Basic Information
Locus ID:
Thhalv10014716m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 13040258 | 13042713 | + | Thhalv10014716m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.72 | 23,380.16 Da | 39.22 | 79.16 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 75 | 8.5271E-41 | IPR033896 |
| Pfam | PF01486 | K-box region | 89 | 172 | 1.7E-22 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 6.4E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 78 | 4.06E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 80 | 1.5E-27 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 6.5E-40 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.356485 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 178 | 12.401032 | IPR002487 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 2.1E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 2.1E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 2.1E-29 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 191 | - | - |
| Coils | Coil | Coil | 144 | 171 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51860.2 | K-box region and MADS-box transcription factor family protein . | 0 |
| RefSeq | XP_006401902.1 | MADS-box protein AGL72 [Eutrema salsugineum] | 0 |
| Q9FLH5 | MADS-box protein AGL72 OS=Arabidopsis thaliana OX=3702 GN=AGL72 PE=2 SV=1 | 0 | |
| TrEMBL | V4KZF2 | MADS-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10014716mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology