Basic Information
Locus ID:
Thhalv10014685m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 370228 | 371065 | + | Thhalv10014685m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 23,410.40 Da | 59.53 | 61.83 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 80 | 132 | 1.04473E-13 | - |
| Pfam | PF12906 | RING-variant domain | 80 | 131 | 8.9E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 75 | 134 | 1.69E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 143 | 9.6E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 79 | 132 | 6.7E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 72 | 138 | 19.203537 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01070.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_006398656.1 | E3 ubiquitin-protein ligase MARCH8 [Eutrema salsugineum] | 0 |
| TrEMBL | V4L8Z8 | RING-CH-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10014685mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology