Basic Information
Locus ID:
Thhalv10014600m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 8651776 | 8653342 | - | Thhalv10014600m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 25,157.89 Da | 58.47 | 62.44 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 116 | 157 | 3.3E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 123 | 160 | 8.71E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 168 | 8.8E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 79 | 158 | 2.1E-13 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 72 | 164 | 17.144518 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 116 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59000.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_006401014.1 | uncharacterized protein LOC18017990 [Eutrema salsugineum] | 0 |
| TrEMBL | V4LJ53 | RING-CH-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10014600mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology