Basic Information
Locus ID:
Thhalv10014416m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
nucleic acid binding nucleotide binding oxidoreductase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 5706990 | 5709233 | + | Thhalv10014416m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 27,455.24 Da | 36.86 | 70.42 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 65 | 4.1E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 92 | 5.24E-16 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 77 | 5.9E-12 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 71 | 3.2E-11 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 75 | 12.918498 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 262 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16840.3 | binding partner of acd11 1. | 0 |
| RefSeq | XP_006400226.1 | binding partner of ACD11 1 [Eutrema salsugineum] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | V4LDB0 | RRM domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10014416mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology