Basic Information
Locus ID:
Thhalv10014400m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 6366904 | 6369881 | + | Thhalv10014400m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.41 | 31,133.57 Da | 64.54 | 57.64 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 153 | 195 | 3.9E-5 | IPR018957 |
| Pfam | PF05495 | CHY zinc finger | 18 | 98 | 1.4E-20 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 200 | 258 | 1.8E-26 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 16 | 87 | 2.75E-18 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 89 | 146 | 4.32E-20 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 152 | 203 | 3.29E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 225 | 3.2E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 226 | 263 | 1.9E-18 | - |
| SMART | SM00184 | ring_2 | 153 | 195 | 7.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 153 | 196 | 11.279532 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 88 | 152 | 34.724941 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 11 | 86 | 25.65399 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_006400417.1 | E3 ubiquitin-protein ligase MIEL1 [Eutrema salsugineum] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | V4KV70 | E3 ubiquitin-protein ligase MIEL1-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10014400mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology