Basic Information
Locus ID:
Thhalv10014246m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 7808951 | 7811346 | + | Thhalv10014246m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 33,868.23 Da | 59.75 | 49.19 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14634 | zinc-RING finger domain | 166 | 211 | 1.4E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 214 | 272 | 3.8E-24 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 31 | 112 | 5.8E-19 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 103 | 160 | 9.81E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 165 | 215 | 1.34E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 27 | 102 | 2.88E-16 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 161 | 212 | 1.7E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 238 | 280 | 1.9E-17 | - |
| SMART | SM00184 | ring_2 | 167 | 209 | 3.7E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 102 | 166 | 34.087799 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 24 | 100 | 25.590847 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 167 | 210 | 11.559839 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_006400801.1 | E3 ubiquitin-protein ligase RZFP34 [Eutrema salsugineum] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | V4LEV2 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10014246mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology