Basic Information
Locus ID:
Thhalv10013823m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 6414103 | 6416374 | - | Thhalv10013823m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 41,762.13 Da | 69.29 | 93.34 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 212 | 259 | 1.30849E-13 | - |
| Pfam | PF12906 | RING-variant domain | 212 | 258 | 9.5E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 208 | 262 | 1.37E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 197 | 266 | 6.4E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 211 | 259 | 9.3E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 204 | 265 | 20.514446 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 40 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18760.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024011943.1 | probable E3 ubiquitin-protein ligase MARCH10 isoform X2 [Eutrema salsugineum] | 0 |
| TrEMBL | V4LPU7 | RING-CH-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013823mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology