Basic Information
Locus ID:
Thhalv10013762m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 8412548 | 8413941 | + | Thhalv10013762m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 42,592.96 Da | 73.15 | 69.80 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16669 | RING-H2_RNF181 | 190 | 234 | 3.08451E-23 | - |
| Pfam | PF13639 | Ring finger domain | 189 | 231 | 3.2E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 10 | 45 | 1.3E-13 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 251 | 376 | 6.5E-38 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 170 | 240 | 3.53E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 157 | 237 | 8.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 190 | 230 | 2.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 190 | 231 | 12.858103 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_006400946.1 | E3 ubiquitin-protein ligase RDUF2 [Eutrema salsugineum] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | V4LF90 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013762mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology