Basic Information
Locus ID:
Thhalv10013738m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 15489771 | 15492600 | + | Thhalv10013738m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 43,109.27 Da | 47.00 | 92.63 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 328 | 367 | 6.5E-7 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 72 | 125 | 1.02E-5 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 140 | 257 | 2.75E-11 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 322 | 370 | 5.76E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 118 | 282 | 3.5E-17 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 319 | 369 | 1.2E-9 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 325 | 367 | 11.032289 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50450.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_024011553.1 | F-box protein At5g50450 isoform X3 [Eutrema salsugineum] | 0 |
| Q9FK27 | F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1 | 0 | |
| TrEMBL | V4LIL3 | MYND-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013738mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology