Basic Information
Locus ID:
Thhalv10013693m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 1705584 | 1706892 | + | Thhalv10013693m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 45,578.13 Da | 57.73 | 81.74 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 149 | 192 | 2.75409E-18 | - |
| Pfam | PF13639 | Ring finger domain | 149 | 192 | 8.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 197 | 7.83E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 199 | 1.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 150 | 191 | 3.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 150 | 192 | 12.504031 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 267 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006399040.1 | RING-H2 finger protein ATL43 [Eutrema salsugineum] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | V4LL40 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013693mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology