Basic Information
Locus ID:
Thhalv10013639m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Fasciclin-like arabinogalactan protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 10275368 | 10277715 | + | Thhalv10013639m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 45,027.07 Da | 33.20 | 87.52 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 38 | 105 | 1.2E-5 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 202 | 327 | 3.3E-11 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 182 | 328 | 4.58E-16 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 33 | 172 | 2.09E-18 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 24 | 165 | 3.5E-9 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 166 | 328 | 5.6E-9 | IPR036378 |
| SMART | SM00554 | fasc_3 | 224 | 328 | 3.7E-14 | IPR000782 |
| SMART | SM00554 | fasc_3 | 62 | 175 | 2.3 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 26 | 172 | 10.657719 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 186 | 325 | 10.519999 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 394 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55730.1 | FASCICLIN-like arabinogalactan 1. fasciclin-like arabinogalactan-protein 1 (Fla1) | 0 |
| RefSeq | XP_006401420.1 | fasciclin-like arabinogalactan protein 1 [Eutrema salsugineum] | 0 |
| Q9FM65 | Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 | 0 | |
| TrEMBL | V4LSL3 | Fasciclin-like arabinogalactan protein 1 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013639mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology