Basic Information
Locus ID:
Thhalv10013582m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 12872075 | 12875387 | + | Thhalv10013582m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.47 | 47,204.75 Da | 31.23 | 74.17 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 267 | 299 | 0.086 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 142 | 178 | 0.0044 | IPR001680 |
| Pfam | PF18345 | Zinc finger domain | 114 | 132 | 3.2E-7 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 338 | 0.0052 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 108 | 132 | 2.62E-6 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 142 | 429 | 4.68E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 285 | 435 | 7.0E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 124 | 284 | 1.1E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 262 | 299 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 255 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 426 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 339 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 139 | 178 | 2.8E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 30 | 55 | 0.001 | IPR000571 |
| SMART | SM00320 | WD40_4 | 343 | 386 | 7.7 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 110 | 134 | 6.0E-5 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 146 | 178 | 10.548323 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 30 | 56 | 11.413015 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 108 | 135 | 14.28608 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 269 | 302 | 8.940149 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 146 | 187 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 308 | 11.711506 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 9.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 165 | 179 | 9.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 326 | 340 | 9.9E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_006401881.1 | zinc finger CCCH domain-containing protein 63 [Eutrema salsugineum] | 0 |
| Q9FNZ1 | Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana OX=3702 GN=ZFWD2 PE=2 SV=1 | 0 | |
| TrEMBL | V4LHV7 | Zinc finger CCCH domain-containing protein 48-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013582mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology