Basic Information
Locus ID:
Thhalv10013409m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
fizzy-related 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 4534463 | 4536607 | - | Thhalv10013409m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 52,563.33 Da | 46.73 | 70.50 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 420 | 456 | 8.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 291 | 326 | 3.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 331 | 371 | 7.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 157 | 457 | 1.1E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 115 | 458 | 3.7E-121 | IPR015943 |
| SMART | SM00320 | WD40_4 | 374 | 414 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 200 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 456 | 4.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 243 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 326 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 371 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 283 | 4.2 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 294 | 335 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 424 | 457 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 211 | 252 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 424 | 457 | 11.708317 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 294 | 326 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 336 | 380 | 8.503359 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 443 | 457 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 162 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_006399885.1 | protein FIZZY-RELATED 3 [Eutrema salsugineum] | 0 |
| Q8LPL5 | Protein FIZZY-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=FZR3 PE=1 SV=1 | 0 | |
| TrEMBL | V4LNB4 | Protein FIZZY-RELATED 3 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013409mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology