Basic Information
Locus ID:
Thhalv10013381m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 7984290 | 7987253 | - | Thhalv10013381m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 52,903.22 Da | 59.58 | 87.66 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 259 | 307 | 1.32357E-15 | - |
| Pfam | PF12906 | RING-variant domain | 259 | 306 | 3.5E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 255 | 310 | 6.62E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 244 | 315 | 7.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 258 | 307 | 2.8E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 251 | 313 | 18.908411 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006400834.1 | E3 ubiquitin-protein ligase MARCH7 isoform X2 [Eutrema salsugineum] | 0 |
| TrEMBL | V4LIM7 | RING-CH-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013381mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology