Basic Information
Locus ID:
Thhalv10013351m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
serine threonine-protein kinase At5g41260
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 371220 | 373431 | - | Thhalv10013351m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 56,266.75 Da | 53.55 | 76.95 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 81 | 311 | 2.4E-24 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 36 | 321 | 5.41E-43 | IPR011009 |
| SUPERFAMILY | SSF48452 | TPR-like | 397 | 491 | 1.14E-15 | IPR011990 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 34 | 135 | 6.0E-26 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 389 | 495 | 5.8E-16 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 137 | 326 | 7.4E-41 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 47 | 314 | 21.417969 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01060.1 | Protein kinase protein with tetratricopeptide repeat domain. | 0 |
| RefSeq | XP_006398657.1 | probable serine/threonine-protein kinase At5g41260 isoform X1 [Eutrema salsugineum] | 0 |
| Q9M324 | Serine/threonine-protein kinase BSK6 OS=Arabidopsis thaliana OX=3702 GN=BSK6 PE=1 SV=1 | 0 | |
| TrEMBL | V4KQB7 | Serine/threonine-protein kinase BSK OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013351mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G09240.1, AT5G01060.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013351m.g.v1.0, Thhalv10020637m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g07620.v2.2, Sp6g40450.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g055450.2N, BniB02g058000.2N, BniB05g031390.2N ... |