Basic Information
Locus ID:
Thhalv10013312m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 9116336 | 9118936 | + | Thhalv10013312m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 54,205.08 Da | 47.63 | 84.96 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 220 | 265 | 1.5E-8 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 1.3E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 206 | 3.2E-17 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 273 | 4.98E-53 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 314 | 380 | 3.85E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 314 | 392 | 4.6E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 152 | 290 | 2.2E-27 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 12 | 151 | 1.7E-32 | IPR036770 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 8.5E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 148 | 0.0053 | IPR002110 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 1.3E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 220 | 249 | 2.4E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0021 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 371 | 5.0E-6 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 11.00669 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 9.914011 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 204 | 12.99165 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 372 | 10.600894 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.06336 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 139 | 9.61777 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 252 | 11.94154 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 139 | 9.595634 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 13.54414 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 11.956926 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 251 | 10.577295 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 236 | 250 | 3.2E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 178 | 193 | 3.2E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_006401175.1 | E3 ubiquitin-protein ligase XBAT32 [Eutrema salsugineum] | 0 |
| Q6NLQ8 | E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana OX=3702 GN=XBAT32 PE=1 SV=1 | 0 | |
| TrEMBL | V4LRZ3 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013312mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology