Basic Information
Locus ID:
Thhalv10013291m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
positive regulation of bicellular tight junction assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 6284028 | 6286388 | - | Thhalv10013291m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.55 | 57,690.24 Da | 38.58 | 90.35 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 44 | 1.1E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 62 | 3.53E-12 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 126 | 485 | 2.04E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 78 | 417 | 1.3E-5 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 50 | 2.1E-7 | - |
| SMART | SM00579 | 9598neu4hmm | 440 | 510 | 2.7E-22 | IPR006566 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 44 | 10.027357 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 326 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48400.2 | - | 0 |
| RefSeq | XP_006400395.1 | F-box/LRR-repeat protein At1g48400 [Eutrema salsugineum] | 0 |
| Q56XW8 | F-box/LRR-repeat protein At1g48400 OS=Arabidopsis thaliana OX=3702 GN=At1g48400 PE=2 SV=2 | 0 | |
| TrEMBL | V4LPR5 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013291mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 8 | AT1G21990.1, AT1G47920.1, AT1G48390.1, AT1G48400.1 ... |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10012238m.g.v1.0, Thhalv10013291m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g29200.v2.2 |
| Brassicaceae | Brassica nigra | 18 | BniB01g014250.2N, BniB02g013580.2N, BniB02g052700.2N ... |