Basic Information
Locus ID:
Thhalv10013287m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 2277241 | 2280207 | + | Thhalv10013287m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 55,209.47 Da | 47.44 | 78.89 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 172 | 202 | 8.3E-5 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 4.4E-17 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 215 | 239 | 2.2E-4 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 306 | 368 | 2.98E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 267 | 4.64E-48 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 7 | 139 | 2.6E-30 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 140 | 264 | 6.8E-22 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 297 | 371 | 9.9E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 214 | 246 | 2.6E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 143 | 1.3 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.092 | IPR002110 |
| SMART | SM00248 | ANK_2a | 171 | 200 | 4.3E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 5.8E-5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.203901 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.826223 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 312 | 362 | 9.214112 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.31873 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 8.84318 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 171 | 203 | 10.73959 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 171 | 200 | 10.073198 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 214 | 239 | 10.550764 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 214 | 239 | 10.579329 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 327 | 336 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 484 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_006399209.1 | E3 ubiquitin-protein ligase XBAT33 [Eutrema salsugineum] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | V4LE31 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013287mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology