Basic Information
Locus ID:
Thhalv10013280m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 2900417 | 2902065 | - | Thhalv10013280m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 59,001.53 Da | 41.66 | 72.78 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 253 | 299 | 2.2E-5 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 163 | 235 | 1.2E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 241 | 3.85E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 103 | 175 | 6.67E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 248 | 309 | 2.21E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 180 | 3.4E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 231 | 463 | 2.1E-33 | - |
| SMART | SM00647 | ibrneu5 | 244 | 305 | 0.046 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 163 | 235 | 1.2E-9 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 78 | 309 | 32.668831 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 475 | 494 | - | IPR001876 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08730.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_006399385.1 | probable E3 ubiquitin-protein ligase ARI16 [Eutrema salsugineum] | 0 |
| Q9C5A4 | Probable E3 ubiquitin-protein ligase ARI16 OS=Arabidopsis thaliana OX=3702 GN=ARI16 PE=2 SV=1 | 0 | |
| TrEMBL | V4LLY2 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013280mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08730.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013280m.g.v1.0, Thhalv10015828m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 5 | Sp4g18730.v2.2, Sp5g15470.v2.2, Sp5g15490.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB05g027560.2N, BniB08g058640.2N, BniB08g058660.2N ... |