Basic Information
Locus ID:
Thhalv10013210m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
CDPK19
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 6691217 | 6694648 | - | Thhalv10013210m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 60,055.88 Da | 39.73 | 81.82 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 436 | 498 | 8.76015E-18 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 58 | 315 | 2.51319E-143 | - |
| Pfam | PF13499 | EF-hand domain pair | 435 | 498 | 4.7E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 364 | 423 | 2.9E-9 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 58 | 316 | 3.2E-77 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 345 | 524 | 1.37E-44 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 58 | 324 | 9.85E-88 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 325 | 500 | 4.3E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 60 | 143 | 2.6E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 144 | 324 | 3.8E-60 | - |
| SMART | SM00054 | efh_1 | 400 | 428 | 0.52 | IPR002048 |
| SMART | SM00054 | efh_1 | 363 | 391 | 4.8E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 472 | 500 | 2.1E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 436 | 464 | 0.088 | IPR002048 |
| SMART | SM00220 | serkin_6 | 58 | 316 | 2.7E-106 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 58 | 316 | 49.968651 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 359 | 394 | 14.234451 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 396 | 431 | 9.854874 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 432 | 467 | 11.947029 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 468 | 503 | 14.820255 | IPR002048 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 178 | 190 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 445 | 457 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 481 | 493 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 409 | 421 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 372 | 384 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 64 | 87 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_006400505.1 | calcium-dependent protein kinase 8 [Eutrema salsugineum] | 0 |
| Q42438 | Calcium-dependent protein kinase 8 OS=Arabidopsis thaliana OX=3702 GN=CPK8 PE=1 SV=1 | 0 | |
| TrEMBL | V4LQ22 | Calcium-dependent protein kinase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013210mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology