Basic Information
Locus ID:
Thhalv10013141m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 2220666 | 2222863 | + | Thhalv10013141m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 62,046.61 Da | 54.75 | 93.66 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 35 | 72 | 2.4E-7 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 308 | 449 | 4.0E-15 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 32 | 140 | 1.13E-16 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 278 | 527 | 9.38E-32 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 455 | 537 | 1.2E-9 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 378 | 454 | 5.4E-12 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 147 | 1.9E-27 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 266 | 376 | 1.3E-13 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 295 | 539 | 12.852766 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 174 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07150.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_024012113.1 | probable inactive receptor-like protein kinase At3g56050 [Eutrema salsugineum] | 0 |
| C0LGU7 | Protein MALE DISCOVERER 1 OS=Arabidopsis thaliana OX=3702 GN=MDIS1 PE=1 SV=1 | 0 | |
| TrEMBL | V4LE18 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013141mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07150.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013141m.g.v1.0, Thhalv10015840m.g.v1.0 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG066390 |