Basic Information
Locus ID:
Thhalv10013100m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 3594650 | 3597622 | + | Thhalv10013100m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 64,163.34 Da | 28.92 | 100.63 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 450 | 546 | 9.24126E-28 | - |
| CDD | cd00030 | C2 | 270 | 372 | 1.92469E-29 | - |
| Pfam | PF00168 | C2 domain | 268 | 372 | 2.3E-26 | IPR000008 |
| Pfam | PF00168 | C2 domain | 448 | 540 | 2.0E-24 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 75 | 254 | 1.5E-15 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 444 | 567 | 1.01E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 266 | 398 | 7.29E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 261 | 397 | 3.9E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 428 | 567 | 1.9E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 269 | 369 | 1.4E-25 | IPR000008 |
| SMART | SM00239 | C2_3c | 449 | 547 | 1.3E-24 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 249 | 370 | 22.231821 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 428 | 548 | 20.981922 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 71 | 255 | 32.157921 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 465 | 477 | 1.0E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 513 | 521 | 1.0E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 491 | 504 | 1.0E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_024012074.1 | synaptotagmin-4 [Eutrema salsugineum] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | V4LBL8 | Synaptotagmin-5 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013100mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology