Basic Information
Locus ID:
Thhalv10013099m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
transcription, DNA-templated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 8186597 | 8190725 | + | Thhalv10013099m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 64,235.48 Da | 34.24 | 69.83 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06203 | CCT motif | 236 | 278 | 1.3E-16 | IPR010402 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 350 | 568 | 9.5E-39 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 321 | 560 | 8.63E-60 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 338 | 572 | 7.0E-60 | - |
| SMART | SM00220 | serkin_6 | 346 | 574 | 7.9E-19 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 346 | 574 | 35.297558 | IPR000719 |
| ProSiteProfiles | PS51017 | CCT domain profile. | 236 | 278 | 15.417831 | IPR010402 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 473 | 485 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60100.1 | pseudo-response regulator 3. Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL. | 0 |
| RefSeq | XP_024012492.1 | probable serine/threonine-protein kinase PBL5 [Eutrema salsugineum] | 0 |
| Q9LVG4 | Two-component response regulator-like APRR3 OS=Arabidopsis thaliana OX=3702 GN=APRR3 PE=1 SV=1 | 0 | |
| TrEMBL | V4LIT0 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013099mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G60080.1, AT5G60090.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009373m.g.v1.0, Thhalv10013099m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g21740.v2.2, Sp6g21750.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g039790.2N, BniB02g039820.2N, BniB05g040380.2N ... |