Basic Information
Locus ID:
Thhalv10013087m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 746476 | 748382 | + | Thhalv10013087m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 64,515.28 Da | 42.95 | 92.61 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 203 | 464 | 1.9E-88 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 11 | 100 | 1.5E-8 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 5 | 101 | 1.41E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 4 | 134 | 2.5E-13 | IPR011333 |
| SMART | SM00225 | BTB_4 | 14 | 108 | 0.0076 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 203 | 488 | 89.367661 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 14 | 84 | 12.226108 | IPR000210 |
| Coils | Coil | Coil | 521 | 548 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_006398770.2 | BTB/POZ domain-containing protein At5g03250 [Eutrema salsugineum] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | V4LK95 | BTB/POZ domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013087mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology