Basic Information
Locus ID:
Thhalv10013060m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 2817618 | 2821123 | - | Thhalv10013060m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 65,530.54 Da | 45.41 | 92.62 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 266 | 558 | 3.77907E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 478 | 515 | 0.029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 521 | 558 | 4.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 311 | 346 | 0.043 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 300 | 3.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 351 | 388 | 0.085 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 261 | 558 | 8.37E-67 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 254 | 522 | 5.5E-60 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 523 | 578 | 1.8E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 390 | 430 | 0.36 | IPR001680 |
| SMART | SM00668 | ctlh | 96 | 153 | 3.3E-5 | IPR006595 |
| SMART | SM00320 | WD40_4 | 519 | 559 | 2.1E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 388 | 0.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 432 | 470 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 516 | 0.52 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 301 | 2.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 346 | 6.1E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 526 | 561 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 96 | 153 | 10.108883 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 526 | 561 | 11.761044 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 269 | 303 | 10.68014 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 314 | 350 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 355 | 13.482671 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 63 | 95 | 8.954357 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 310 | 13.215325 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 288 | 302 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 546 | 560 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 288 | 302 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 375 | 389 | 2.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 568 | 587 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_006399358.1 | WD repeat-containing protein 26 homolog [Eutrema salsugineum] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | V4N5M9 | WD repeat-containing protein 26 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013060mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology