Basic Information
Locus ID:
Thhalv10013010m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
PDC1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 10612305 | 10614573 | + | Thhalv10013010m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 65,591.98 Da | 29.99 | 89.47 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 408 | 590 | 3.19184E-88 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 49 | 210 | 3.70721E-93 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 46 | 212 | 1.6E-35 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 453 | 578 | 1.9E-15 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 243 | 360 | 9.9E-20 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 46 | 225 | 2.24E-45 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 238 | 385 | 1.11E-32 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 408 | 600 | 1.0E-41 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 43 | 219 | 2.4E-61 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 402 | 589 | 2.0E-56 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 233 | 395 | 4.9E-41 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 41 | 602 | 2.9E-209 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_006401505.1 | pyruvate decarboxylase 2 [Eutrema salsugineum] | 0 |
| Q9FFT4 | Pyruvate decarboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | V4LSU4 | pyruvate decarboxylase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013010mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology