Basic Information
Locus ID:
Thhalv10013008m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
PDC1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 264751 | 267191 | + | Thhalv10013008m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 65,888.24 Da | 34.61 | 84.68 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 408 | 590 | 1.40045E-90 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 49 | 210 | 6.53459E-92 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 243 | 360 | 1.9E-20 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 453 | 578 | 9.1E-17 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 46 | 217 | 1.3E-35 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 408 | 600 | 1.63E-42 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 238 | 384 | 4.36E-32 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 46 | 225 | 1.56E-44 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 42 | 221 | 5.5E-62 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 233 | 395 | 1.6E-41 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 402 | 589 | 3.4E-57 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 41 | 602 | 2.5E-213 | IPR012110 |
| ProSitePatterns | PS00187 | Thiamine pyrophosphate enzymes signature. | 467 | 486 | - | IPR000399 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_006398630.1 | pyruvate decarboxylase 4 [Eutrema salsugineum] | 0 |
| Q9M040 | Pyruvate decarboxylase 4 OS=Arabidopsis thaliana OX=3702 GN=PDC4 PE=2 SV=1 | 0 | |
| TrEMBL | V4LJW4 | pyruvate decarboxylase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013008mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology