Basic Information
Locus ID:
Thhalv10012890m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Flowering time control protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 4396486 | 4401020 | - | Thhalv10012890m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 74,832.19 Da | 54.86 | 50.66 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 141 | 422 | 1.65783E-71 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 142 | 169 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 177 | 210 | 0.0024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 222 | 253 | 0.0011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 391 | 422 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 258 | 295 | 1.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 343 | 379 | 8.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 337 | 1.4E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 133 | 422 | 2.15E-77 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 263 | 344 | 1.1E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 345 | 439 | 3.3E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 81 | 262 | 3.9E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 172 | 211 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 295 | 2.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 253 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 125 | 169 | 0.002 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 380 | 3.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 337 | 1.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 423 | 9.7E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 263 | 300 | 12.472858 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 221 | 253 | 8.966513 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 347 | 379 | 9.731054 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 304 | 16.022453 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 305 | 340 | 11.101955 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 179 | 211 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 221 | 262 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 179 | 211 | 9.414692 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 391 | 422 | 9.09833 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 391 | 422 | 10.842632 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 347 | 379 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 305 | 346 | 14.61889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 137 | 169 | 9.940341 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 282 | 296 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 240 | 254 | 5.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 324 | 338 | 5.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 282 | 296 | 5.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 670 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 536 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13480.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to yeast Pfs2p, an mRNA processing factor. Involved in regulation of flowering time; affects FCA mRNA processing. Homozygous mutants are late flowering, null alleles are embryo lethal. | 0 |
| RefSeq | XP_006399839.1 | flowering time control protein FY [Eutrema salsugineum] | 0 |
| Q6NLV4 | Flowering time control protein FY OS=Arabidopsis thaliana OX=3702 GN=FY PE=1 SV=1 | 0 | |
| TrEMBL | V4LFU6 | WD_REPEATS_REGION domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012890mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28976 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17172 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032394 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g041450 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29958, Sbi_jg43421 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18479 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004240 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl14343, Sgl14344, Sgl19510, Sgl66259, Sgl66263, Sgl70574 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000015624, gene:ENSEOMG00000021875 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0004450, CQ.Regalona.r1.2BG0005670 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165980 |
| Apiaceae | Apium graveolens | 1 | Ag1G00190 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G008240, COCNU_16G002290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714650, gene-LOC103722450 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.77.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G16520 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G13480.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012890m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g30540.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g024850.2N, BniB08g006340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0874 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0886 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g11330 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0510s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g10270 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3166, nbisL1-mrna-4862 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1980 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014814 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02357 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4521, BH02.4571, CH02.4622 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0046570, gene-QOZ80_3BG0295310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0495130.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_058078 |
| Poaceae | Oryza coarctata | 2 | Oco01G029980, Oco02G031140 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g72220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G401000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403030 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G000200, Chr02G000990, Chr05G033670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G469300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG043980, gene_TRIDC5BG047980 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G293600.2, TraesCS5B02G292800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb140970_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-12611, nbis-gene-26152, nbis-gene-26153 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10909, Zma_g8457 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1077, evm.TU.LG25.286 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.55 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7151 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19600 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14506 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.346 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009963 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-241 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22077 |
| Salicaceae | Populus euphratica | 2 | populus_peu04256, populus_peu35076 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635775 |
| Solanaceae | Solanum chilense | 1 | SOLCI002121600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028734 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13509 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3886 |
| Zosteraceae | Zostera marina | 1 | Zosma06g29860.v3.1 |