Basic Information
Locus ID:
Thhalv10012869m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 10226363 | 10228402 | - | Thhalv10012869m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 75,441.04 Da | 40.73 | 87.81 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 369 | 639 | 6.17406E-96 | - |
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 30 | 265 | 5.803E-87 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 363 | 635 | 3.0E-50 | IPR000719 |
| Pfam | PF00139 | Legume lectin domain | 30 | 274 | 6.3E-62 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 30 | 273 | 9.79E-61 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 346 | 655 | 1.19E-79 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 440 | 658 | 1.6E-64 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 27 | 282 | 3.5E-66 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 347 | 439 | 1.9E-29 | - |
| SMART | SM00220 | serkin_6 | 363 | 636 | 6.0E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 363 | 653 | 38.831059 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 487 | 499 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 369 | 392 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55830.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_006401411.1 | probable L-type lectin-domain containing receptor kinase S.7 [Eutrema salsugineum] | 0 |
| Q9FHG4 | Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana OX=3702 GN=LECRKS7 PE=2 SV=1 | 0 | |
| TrEMBL | V4LGJ2 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012869mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology