Basic Information
Locus ID:
Thhalv10012853m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 4778758 | 4782687 | + | Thhalv10012853m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 74,518.30 Da | 53.24 | 67.92 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 424 | 553 | 1.27221E-62 | - |
| CDD | cd00201 | WW | 20 | 49 | 8.77607E-5 | IPR001202 |
| Pfam | PF00397 | WW domain | 19 | 49 | 6.9E-7 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 229 | 398 | 2.7E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 436 | 544 | 4.4E-33 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 277 | 560 | 7.55E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 1.56E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 416 | 586 | 1.7E-58 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 14 | 59 | 7.3E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 125 | 415 | 3.8E-82 | IPR027417 |
| SMART | SM00487 | ultradead3 | 224 | 427 | 8.6E-62 | IPR014001 |
| SMART | SM00490 | helicmild6 | 464 | 544 | 3.8E-33 | IPR001650 |
| SMART | SM00456 | ww_5 | 18 | 51 | 1.8E-4 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 17 | 51 | 11.0732 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 236 | 410 | 29.245535 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 439 | 583 | 25.317665 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 356 | 364 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 23 | 49 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 576 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 667 | 681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 629 | 691 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_024012675.1 | DEAD-box ATP-dependent RNA helicase 46 [Eutrema salsugineum] | 0 |
| Q9LYJ9 | DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2 | 0 | |
| TrEMBL | V4LNK0 | DEAD box RNA helicase family protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012853mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology