Basic Information
Locus ID:
Thhalv10012754m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RNA polymerase II C-terminal domain phosphatase-like 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 279123 | 283341 | + | Thhalv10012754m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 84,935.60 Da | 50.86 | 81.23 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 656 | 719 | 6.98896E-13 | - |
| CDD | cd07521 | HAD_FCP1-like | 244 | 360 | 1.22279E-20 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 657 | 719 | 3.8E-9 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 250 | 375 | 1.4E-8 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 127 | 392 | 8.24E-23 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 657 | 720 | 4.3E-13 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 128 | 399 | 3.3E-29 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 652 | 727 | 6.7E-12 | - |
| SMART | SM00577 | forpap2 | 193 | 369 | 1.2E-12 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 656 | 720 | 1.8E-9 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 134 | 385 | 20.32102 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 655 | 721 | 12.984985 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 761 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 633 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 490 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_024012001.1 | RNA polymerase II C-terminal domain phosphatase-like 2 [Eutrema salsugineum] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | V4LCJ0 | protein-serine/threonine phosphatase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012754mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology