Basic Information
Locus ID:
Thhalv10012748m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
glycerophosphodiester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 10428437 | 10432142 | - | Thhalv10012748m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 84,401.00 Da | 38.39 | 90.26 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 50 | 348 | 0.0 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 365 | 669 | 3.5382E-176 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 371 | 664 | 5.3E-24 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 49 | 348 | 1.83E-38 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 365 | 669 | 9.68E-41 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 365 | 670 | 2.5E-40 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 48 | 349 | 6.0E-33 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 50 | 349 | 49.310997 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 365 | 670 | 44.528255 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 717 | 744 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_006401453.1 | glycerophosphodiester phosphodiesterase GDPDL4 [Eutrema salsugineum] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | V4NAN5 | glycerophosphodiester phosphodiesterase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012748mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology