Basic Information
Locus ID:
Thhalv10012698m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 3995715 | 4001831 | - | Thhalv10012698m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 91,874.39 Da | 60.33 | 80.40 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 21 | 116 | 4.80185E-10 | - |
| CDD | cd00159 | RhoGAP | 181 | 334 | 3.87757E-38 | - |
| Pfam | PF00620 | RhoGAP domain | 181 | 325 | 4.3E-31 | IPR000198 |
| Pfam | PF00169 | PH domain | 19 | 124 | 2.6E-12 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 601 | 680 | 1.8E-19 | IPR025757 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 181 | 372 | 4.71E-31 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 15 | 128 | 7.4E-17 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 8 | 127 | 2.2E-16 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 149 | 370 | 3.8E-39 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 178 | 368 | 5.6E-25 | IPR000198 |
| SMART | SM00233 | PH_update | 19 | 127 | 1.8E-15 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 14.6181 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 172 | 371 | 29.366478 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 434 | - | - |
| Coils | Coil | Coil | 208 | 228 | - | - |
| Coils | Coil | Coil | 649 | 683 | - | - |
| Coils | Coil | Coil | 591 | 625 | - | - |
| Coils | Coil | Coil | 559 | 586 | - | - |
| Coils | Coil | Coil | 785 | 812 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12150.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_006399732.1 | rho GTPase-activating protein 6 [Eutrema salsugineum] | 0 |
| Q9FMP8 | Rho GTPase-activating protein 6 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP6 PE=2 SV=1 | 0 | |
| TrEMBL | V4KTA8 | Rho GTPase-activating protein 7-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012698mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology