Basic Information
Locus ID:
Thhalv10012687m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ATP binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 12152578 | 12157435 | + | Thhalv10012687m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 93,447.07 Da | 52.97 | 85.23 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 555 | 688 | 8.16667E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 557 | 686 | 5.9E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 709 | 750 | 1.7E-10 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 516 | 745 | 1.42E-56 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 689 | 768 | 1.5E-93 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 516 | 769 | 1.5E-93 | IPR027417 |
| SMART | SM00382 | AAA_5 | 553 | 690 | 5.1E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 660 | 679 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 747 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 747 | 784 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 479 | - | - |
| Coils | Coil | Coil | 749 | 769 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52882.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_006401767.1 | uncharacterized protein LOC18016424 [Eutrema salsugineum] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | V4KZ08 | AAA domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012687mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology