Basic Information
Locus ID:
Thhalv10012685m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 10366454 | 10369729 | - | Thhalv10012685m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 93,752.86 Da | 37.79 | 84.48 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 518 | 782 | 1.64308E-91 | - |
| CDD | cd00028 | B_lectin | 39 | 166 | 1.06959E-26 | IPR001480 |
| CDD | cd01098 | PAN_AP_plant | 353 | 439 | 7.68539E-21 | - |
| Pfam | PF08276 | PAN-like domain | 356 | 425 | 3.1E-18 | IPR003609 |
| Pfam | PF00954 | S-locus glycoprotein domain | 230 | 335 | 2.7E-18 | IPR000858 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 515 | 779 | 1.8E-46 | IPR001245 |
| Pfam | PF01453 | D-mannose binding lectin | 77 | 192 | 4.9E-26 | IPR001480 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 492 | 782 | 2.02E-77 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 77 | 196 | 6.02E-21 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 22 | 163 | 2.2E-11 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 587 | 793 | 4.8E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 472 | 586 | 9.8E-34 | - |
| SMART | SM00108 | blect_4 | 33 | 166 | 1.2E-32 | IPR001480 |
| SMART | SM00473 | ntp_6 | 357 | 440 | 6.0E-7 | IPR003609 |
| SMART | SM00220 | serkin_6 | 512 | 758 | 5.4E-28 | IPR000719 |
| PIRSF | PIRSF000641 | SRK | 1 | 834 | 4.5E-238 | IPR024171 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 27 | 153 | 15.854936 | IPR001480 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 356 | 441 | 10.145876 | IPR003609 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 512 | 762 | 38.279831 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 518 | 539 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 632 | 644 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 812 | 834 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21380.1 | receptor kinase 3. encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. | 0 |
| RefSeq | XP_024011186.1 | receptor-like serine/threonine-protein kinase SD1-8 [Eutrema salsugineum] | 0 |
| O81905 | Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 | 0 | |
| TrEMBL | V4KY09 | Receptor-like serine/threonine-protein kinase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012685mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10012685m.g.v1.0, Thhalv10014181m.g.v1.0 ... |