Basic Information
Locus ID:
Thhalv10012650m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 7457490 | 7463987 | - | Thhalv10012650m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 98,299.95 Da | 46.00 | 81.04 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 699 | 867 | 4.49502E-61 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 278 | 866 | 1.5E-83 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 276 | 868 | 7.46E-108 | IPR038765 |
| Gene3D | G3DSA:3.30.2230.10 | - | 8 | 132 | 6.9E-6 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 593 | 871 | 1.7E-56 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 268 | 501 | 2.6E-65 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 278 | 869 | 57.012253 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 812 | 829 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 279 | 294 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 629 | 648 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 649 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_006400708.1 | ubiquitin carboxyl-terminal hydrolase 8 [Eutrema salsugineum] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | V4N8W1 | Ubiquitin carboxyl-terminal hydrolase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012650mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology