Basic Information
Locus ID:
Thhalv10012625m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 543314 | 546717 | + | Thhalv10012625m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 99,586.51 Da | 41.81 | 67.46 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 553 | 589 | 0.0026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 405 | 437 | 2.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 511 | 547 | 9.7E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 400 | 729 | 7.12E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 389 | 745 | 3.1E-60 | IPR015943 |
| SMART | SM00320 | WD40_4 | 550 | 589 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 438 | 8.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 509 | 547 | 1.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 645 | 681 | 7.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 682 | 723 | 0.62 | IPR001680 |
| SMART | SM00320 | WD40_4 | 591 | 630 | 0.77 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 406 | 447 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 516 | 550 | 11.418318 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 516 | 556 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 406 | 440 | 11.181047 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 556 | 598 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 556 | 592 | 10.970139 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 425 | 439 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 534 | 548 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 425 | 439 | 2.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 534 | 548 | 2.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 576 | 590 | 2.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 763 | 845 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 791 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 845 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02430.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_006398703.1 | WD repeat-containing protein 44 [Eutrema salsugineum] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | V4N476 | WD_REPEATS_REGION domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012625mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology