Basic Information
Locus ID:
Thhalv10012604m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
eto1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 8828470 | 8831804 | + | Thhalv10012604m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 106,058.42 Da | 45.32 | 87.70 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18190 | BTB_POZ_ETO1-like | 211 | 293 | 6.81053E-35 | - |
| Pfam | PF00651 | BTB/POZ domain | 207 | 308 | 8.3E-5 | IPR000210 |
| Pfam | PF13181 | Tetratricopeptide repeat | 742 | 771 | 3.7E-5 | IPR019734 |
| SUPERFAMILY | SSF48452 | TPR-like | 624 | 772 | 1.14E-9 | IPR011990 |
| SUPERFAMILY | SSF54695 | POZ domain | 207 | 308 | 1.41E-10 | IPR011333 |
| SUPERFAMILY | SSF48452 | TPR-like | 505 | 870 | 6.96E-20 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 408 | 537 | 1.44E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 805 | 922 | 4.7E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 376 | 577 | 2.8E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 618 | 803 | 1.4E-18 | IPR011990 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 202 | 349 | 4.7E-16 | IPR011333 |
| SMART | SM00028 | tpr_5 | 741 | 774 | 7.1E-4 | IPR019734 |
| SMART | SM00225 | BTB_4 | 210 | 310 | 8.1E-5 | IPR000210 |
| SMART | SM00028 | tpr_5 | 541 | 574 | 170.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 412 | 445 | 360.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 667 | 700 | 42.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 870 | 903 | 6.1 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 741 | 774 | 9.5289 | IPR019734 |
| Coils | Coil | Coil | 793 | 813 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58550.1 | ETO1-like 2. Encodes a paralog of ETO1, which is a negative regulator of ACS5 (a key enzyme in ethylene biosynthesis pathway). EOL2 also interacts with and inhibits the activity of ACS5. | 0 |
| RefSeq | XP_006401070.1 | ETO1-like protein 2 [Eutrema salsugineum] | 0 |
| Q9LV01 | ETO1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EOL2 PE=1 SV=2 | 0 | |
| TrEMBL | V4LRQ1 | BTB domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012604mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32480 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15223 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003273 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4808, Sbi_jg7275 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12734 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001451 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51665, Sgl56974 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004208, gene:ENSEOMG00000023479 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0010520, CQ.Regalona.r1.5BG0011030 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30061070, pistato.v30267560 |
| Apiaceae | Apium graveolens | 1 | Ag2G01831 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G006310 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706721 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G25809, Ftri12G22421 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G51770.2, AT5G58550.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10010100m.g.v1.0, Thhalv10012604m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g20600.v2.2, Sp5g10500.v2.2, Sp6g20240.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g037950.2N, BniB02g074490.2N, BniB06g006360.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G0982, Ceq08G1837 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1000, Cgl08G1895 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g16870 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g32230, gene.Thate06g02770 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5512 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.969, evm.TU.LG09.1053 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002688, Pov_00016341 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G10681, Lb7G33968, Lb7G33977 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3973, BH01.4368, CH01.4607 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0244460, gene-QOZ80_3BG0283570 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0384400.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_008092, gene-QYE76_068726 |
| Poaceae | Oryza coarctata | 2 | Oco05G010770, Oco06G011000 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g28830.1, LOC_Os03g18360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G387800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102434, Pt_Chr0102465 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G032160, Chr12G007460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G343700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG015380, gene_TRIDC4BG033570 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G111500.1, TraesCS4B02G192300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb013600_P001, Zm00001eb396900_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-3604 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3828 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG03.443, evm.TU.LG04.2820, evm.TU.LG16.836 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37450 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_12_RagTag.99, evm.TU.Scaffold_13_RagTag.956 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-24700, nbisL1-mrna-30059, nbisL1-mrna-4604 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-12897, nbisL1-mrna-1364, nbisL1-mrna-15494 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-16323, nbisL1-mrna-19406, nbisL1-mrna-3675 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000009l.998, evm.TU.utg000015l.568 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00006267, Maker00015658, Maker00017259, Maker00018123 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-2668, nbisL1-mrna-4473, nbisL1-mrna-4936 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-11634, nbisL1-mrna-13784, nbisL1-mrna-16670 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu01731, populus_peu11460, populus_peu36082 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132630903, gene-LOC132630950 |
| Solanaceae | Solanum chilense | 2 | SOLCI000749400, SOLCI001511200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002738, gene-LOC107031354 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12187, gene_12260 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2778, TC06G0264 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20720.v3.1 |