Basic Information
Locus ID:
Thhalv10012589m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 19156267 | 19161073 | - | Thhalv10012589m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 104,782.85 Da | 34.12 | 91.07 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 649 | 904 | 2.58441E-87 | - |
| Pfam | PF00069 | Protein kinase domain | 633 | 899 | 1.4E-45 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 63 | 9.7E-6 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 43 | 389 | 2.14E-53 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 617 | 915 | 4.45E-77 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 285 | 408 | 9.1E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 182 | 7.3E-41 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 707 | 921 | 3.3E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 602 | 706 | 1.3E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 183 | 284 | 2.4E-22 | IPR032675 |
| SMART | SM00220 | serkin_6 | 631 | 905 | 1.2E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 631 | 905 | 38.604912 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 267 | 289 | 7.865969 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 751 | 763 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 637 | 659 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 915 | 953 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49760.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006402242.1 | probable leucine-rich repeat receptor-like protein kinase At5g49770 [Eutrema salsugineum] | 0 |
| Q8GZ99 | Leucine-rich repeat receptor protein kinase HPCA1 OS=Arabidopsis thaliana OX=3702 GN=HPCA1 PE=1 SV=1 | 0 | |
| TrEMBL | V4L0B7 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012589mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology