Basic Information
Locus ID:
Thhalv10012546m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
glycosyl hydrolase family 38 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 4576962 | 4582951 | + | Thhalv10012546m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 116,385.19 Da | 36.29 | 81.22 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 43 | 319 | 0.0 | - |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 44 | 356 | 3.3E-95 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 901 | 1008 | 8.6E-13 | IPR041147 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 361 | 453 | 1.3E-22 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 603 | 819 | 1.0E-50 | IPR011682 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 460 | 1012 | 3.45E-144 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 32 | 357 | 2.45E-109 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 360 | 455 | 1.18E-28 | IPR028995 |
| Gene3D | G3DSA:2.70.98.30 | - | 602 | 867 | 2.1E-93 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 43 | 324 | 1.7E-120 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 325 | 403 | 1.3E-30 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 475 | 601 | 3.9E-27 | IPR013780 |
| Gene3D | G3DSA:2.60.40.1360 | - | 887 | 1015 | 6.6E-35 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 404 | 459 | 7.6E-22 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 361 | 435 | 5.6E-25 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_006399902.1 | probable alpha-mannosidase At5g13980 [Eutrema salsugineum] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | V4KTS4 | Alpha-mannosidase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012546mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology