Basic Information
Locus ID:
Thhalv10012503m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 2006860 | 2015994 | - | Thhalv10012503m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 130,993.77 Da | 42.57 | 77.15 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 55 | 179 | 6.43354E-41 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 197 | 525 | 4.32124E-169 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 884 | 1094 | 1.0E-56 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 199 | 520 | 4.0E-46 | IPR001394 |
| Pfam | PF00917 | MATH domain | 61 | 181 | 4.1E-19 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 624 | 874 | 6.0E-75 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 194 | 551 | 4.51E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 52 | 188 | 3.92E-41 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 54 | 195 | 5.4E-52 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 196 | 524 | 1.9E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 800 | 897 | 3.0E-26 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 683 | 799 | 6.2E-45 | - |
| SMART | SM00061 | math_3 | 56 | 160 | 2.5E-20 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 199 | 523 | 40.060352 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 54 | 179 | 38.059464 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 200 | 215 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 439 | 456 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 49 | - | - |
| Coils | Coil | Coil | 536 | 559 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_006399134.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Eutrema salsugineum] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | E4MX39 | ubiquitinyl hydrolase 1 OS=Eutrema halophilum OX=98038 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology