Basic Information
Locus ID:
Thhalv10012501m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 2823706 | 2830098 | + | Thhalv10012501m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 122,731.24 Da | 40.65 | 80.31 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 396 | 459 | 2.2E-4 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 912 | 946 | 2.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 832 | 1092 | 3.66E-35 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 352 | 665 | 2.2E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 548 | 733 | 9.1E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 334 | 545 | 1.5E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 768 | 1099 | 5.7E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 823 | 861 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 907 | 946 | 4.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 382 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 626 | 667 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 999 | 1039 | 400.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 534 | 0.34 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 490 | 2.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 583 | 623 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 580 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 864 | 904 | 4.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 443 | 0.068 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 8.5E-14 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 914 | 955 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 914 | 946 | 10.416506 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.403513 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 456 | 499 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 8.993612 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 601 | 632 | 8.67045 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1094 | 1115 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_006399361.1 | topless-related protein 4 [Eutrema salsugineum] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | V4LAW6 | Topless-related protein 4-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012501mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology