Basic Information
Locus ID:
Thhalv10012465m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 2281906 | 2285706 | + | Thhalv10012465m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 137,752.69 Da | 33.44 | 103.19 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 113 | 152 | 2.3E-6 | IPR025875 |
| Pfam | PF00560 | Leucine Rich Repeat | 188 | 209 | 1.9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 260 | 281 | 1.1 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 632 | 688 | 7.9E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 522 | 580 | 5.3E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 62 | 1.0E-8 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 994 | 1262 | 4.1E-46 | IPR001245 |
| Pfam | PF13516 | Leucine Rich repeat | 376 | 392 | 0.59 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 600 | 884 | 7.65E-60 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 972 | 1263 | 2.43E-79 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 340 | 586 | 3.66E-49 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 38 | 331 | 8.33E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 273 | 332 | 5.5E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 592 | 894 | 1.3E-86 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 333 | 591 | 8.9E-75 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 178 | 272 | 1.2E-28 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 955 | 1066 | 7.0E-39 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1067 | 1266 | 6.0E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 177 | 1.4E-45 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 699 | 722 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 567 | 593 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 845 | 870 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 797 | 821 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 160 | 184 | 9.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 376 | 400 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 257 | 281 | 47.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 185 | 209 | 58.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 88 | 112 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 136 | 159 | 18.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 723 | 746 | 76.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 651 | 683 | 81.0 | - |
| SMART | SM00369 | LRR_typ_2 | 519 | 543 | 10.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 821 | 847 | 39.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 424 | 447 | 450.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 209 | 235 | 770.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 257 | 283 | 240.0 | - |
| SMART | SM00369 | LRR_typ_2 | 651 | 675 | 15.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 991 | 1263 | 1.1E-33 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 136 | 162 | 410.0 | - |
| SMART | SM00369 | LRR_typ_2 | 723 | 747 | 17.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 991 | 1266 | 37.643803 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 162 | 184 | 7.32692 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 997 | 1020 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1113 | 1125 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 519 | 532 | 2.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 139 | 152 | 2.1E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_006399210.1 | leucine-rich repeat receptor protein kinase EMS1 [Eutrema salsugineum] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | V4LLH5 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012465mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |